Procedure

                    It is the tension  between creativity and skepticism that has produced the stunning and unexpected findings of science.     —Carl Sagan 

Home Abstract Background Question Hypothesis Objective/variable Material Procedure Results Analysis Discussion Sources of Error Conclusion Future Research Appendix Reference Acknowledgement

 

Procedures:  

 

Overnight culture [see appendix 1]: Overnight culture was prepared each day for the next day's use.  

Figure 9. Overnight culture (on the left) compare
to the LB broth (on the right). Due to bacteria growth, 
the culture is not as clear as the LB broth without bacteria.

Determination of E. coli concentration in LB broth (liquid nutrient for bacteria) that is suitable for plate reader [See Appendix 3]


The overall procedure of this experiment includes three parts: 

  1. Test for the effects by ultrasound alone on E. coli

E. coli liquid culture with concentration of 0.01 was pipetted to 96-well plates, each well has a content of 200uL. There plates were exposed to 42kHz ultrasound at five different time lengths: 10min, 20min, 30min, 40min, 50min and 60min. Another plate was not sonicated, which acted as a control. After the sonication, all the plates were incubated for 24hrs. The viability of E. coli was based on the values obtained from the plate reader and was compared with the control, which had no bacteria.  

Figure 10. 96-well plate. It is used to grow bacteria and to ensure 
many replicates for each trial.

    2.    Test for MIC of spectinomycin on E. Coli DH5α

In order to find the MIC of spectinomycin, a 2-fold serial dilution with broth was used to dilute spectinomycin concentration covering a range of 256μg/mL to 1μg/mL. The dilution was created by adding spectinomycin of concentration of 256μg/mL to the first lane and adding 100μL of E. coli of concentration of 0.01 from lane 2 to lane 12 in the round bottom 96-well plate. Then 100μL of spectinomycin was transferred from the first lane to the second lane and mix well. This transfer was continued to the 12th lane, in which the concentration was reduced to 1μg/mL. This process was repeated for one more plate, which acted as the control. Note that the actual E. coli concentration was 0.005, due to 100μL of bacteria of concentration 0.01 and 100μL of spectinomycin being added to the initial lane of the serial dilution. The two 96-well plates were then incubated for 24h and OD levels read by the plate reader. The lowest concentration of spectinomycin resulting in almost no growth of the bacteria was identified as the MIC, and the concentration of spectinomycin that was one deviation below the MIC was the one used in the synergy test.

 

    3.    Test for synergy (combination of ultrasound and spectinomycin)

After the two preliminary tests were done for the effects E. coli generated by ultrasound and the MIC of spectinomycin, the next step was to test if the ultrasound increased the effectiveness of spectinomycin in killing E. coli. Five 96-well plates were set up for E. coli with a concentration of 0.005 with added spectinomycin of concentration one deviation below the MIC. Then the plates were sonicated with ultrasound with a frequency of 42kHz over different time length: 15min, 30min, 45min, and 60min. Another plate was set up without sonication as the control. The plates were then incubated for 24h and their OD levels read by the plate reader. The viability of E. coli was based on the values obtained from the plate reader and were compared with the control (no sonication).  

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Enhancement of Antibiotic Action with an Application of Ultrasound
by Liz Meng: lizmeng10@hotmail.com
Victor Feng: haovictor_feng@hotmail.com
Sir Winston Churchill High School, Calgary.AB

01/05/2007